Bulker Registry

Discover and load container environments

27 crates 2421 commands 3 namespaces 83 manifests

bulker

alpine

Used to test the host_commands domain, which allows creating isolated bulker environnments. This is the minimal set of host commands required for docker/bulker to run.

0 commands 12 host
bulker activate bulker/alpine

alpinebase

Used to test the host_commands domain, which allows creating isolated bulker environnments. This is the minimal set of host commands required for docker/bulker to run.

0 commands 8 host
bulker activate bulker/alpinebase

biobase

A curated collection of the most common bioinformatics command-line tools, containerized for use with bulker.

v0.1.18 69 commands 20 tags
bulker activate bulker/biobase:0.1.18

coreutils

This is the complete set of GNU coreutils. Used to run strict bulker environnments.

v1.0.0 93 commands 3 host
bulker activate bulker/coreutils:1.0.0

demo

v1.0.0 2 commands 2 tags
bulker activate bulker/demo:1.0.0

demo2

7 commands
bulker activate bulker/demo2

pi

1 commands
bulker activate bulker/pi

databio

bedmaker

v1.0.0 4 commands
bulker activate databio/bedmaker:1.0.0

bedstuff

v1.0.0 4 commands
bulker activate databio/bedstuff:1.0.0

cran

R environment for CRAN package checking. Uses rocker/tidyverse for both R-release and R-devel. Site-library mounts persist installed packages across container runs, including during R CMD check --as-cran.

v1.0.0 4 commands
bulker activate databio/cran:1.0.0

databio

Adds python to the lab crate.

v1.0.0 7 commands
bulker activate databio/databio:1.0.0

lab

v1.2.1 18 commands 3 tags
bulker activate databio/lab:1.2.1

lab_geofetch

v1.0.0 29 commands
bulker activate databio/lab_geofetch:geofetch_1.0.0

mediabuilder

v1.0.0 12 commands
bulker activate databio/mediabuilder:1.0.0

methpl

v1.0.1 23 commands 2 host
bulker activate databio/methpl:1.0.1

nsheff

v1.0.3 21 commands 2 tags
bulker activate databio/nsheff:1.0.3

pepatac

v1.1.4 24 commands 2 host 17 tags
bulker activate databio/pepatac:1.1.4

pepkit

v1.0.0 1 commands
bulker activate databio/pepkit:1.0.0

peppro

v1.1.0 21 commands 3 host 4 tags
bulker activate databio/peppro:1.1.0

python

v2.0.0 4 commands 2 tags
bulker activate databio/python:1.0.0

refgenie

Containerized tools for building refgenie reference assets. Self-contained: activate this crate alone. Image pins are synced quarterly from bulker/biobase by update_refgenie_crate.py.

v1.1.1 16 commands 11 tags
bulker activate databio/refgenie:1.1.1

sciquill

v1.3.0 12 commands 1 host 3 tags
bulker activate databio/sciquill:1.3.0

sra_convert

v0.0.1 5 commands
bulker activate databio/sra_convert:convert_0.0.1

vep

v1.0.0 1 commands
bulker activate databio/vep:1.0.0

waldronlab

bioconductor

v3.23 6 commands
bulker activate waldronlab/bioconductor:3.23

levi

v1.0.4 6 commands
bulker activate waldronlab/levi:1.0.4

metagenomics

v1.0.0 54 commands
bulker activate waldronlab/metagenomics:1.0.0