manifest:
  name: databio/databio
  version: 1.0.0
  import:
  - bulker/alpine:default
  - databio/pepkit:default
  - databio/lab:1.0
  commands:
  - command: geofetch
    docker_image: nsheff/geofetch
    docker_args: -i
    docker_command: geofetch
  - command: pigz
    docker_image: nsheff/pigz
    docker_command: pigz
    docker_args: -i
  - command: pip3
    docker_image: nsheff/python3
  - command: prefetch
    docker_image: humancellatlas/sratools
    docker_command: prefetch
  - command: python3
    docker_args: -it
    docker_image: python:3.7.4
    docker_command: python3
  - command: R
    docker_image: nsheff/rbase
    docker_command: R
    docker_args: -it --volume=${HOME}/.local/lib/R:/usr/local/lib/R/host-site-library
  - command: samtools
    docker_args: -i
    docker_image: quay.io/biocontainers/samtools:1.9--h91753b0_8