databio/sra_convert

Install

bulker activate databio/sra_convert:convert_0.0.1

Commands (5)

Command	Docker Image	Args
`curl`	curlimages/curl:7.69.1	`-i`
`fastq-dump`	quay.io/biocontainers/sra-tools:2.10.0--pl526he1b5a44_0
`geofetch`	nsheff/geofetch	`-i`
`pigz`	nsheff/pigz	`-i`
`prefetch`	quay.io/biocontainers/sra-tools:2.10.0--pl526he1b5a44_0

manifest:
  name: databio/sra_convert
  version: 0.0.1
  commands:
  - command: curl
    docker_image: curlimages/curl:7.69.1
    docker_command: curl
    docker_args: -i
  - command: fastq-dump
    docker_image: quay.io/biocontainers/sra-tools:2.10.0--pl526he1b5a44_0
    docker_command: fastq-dump
  - command: geofetch
    docker_image: nsheff/geofetch
    docker_args: -i
    docker_command: geofetch
  - command: pigz
    docker_image: nsheff/pigz
    docker_command: pigz
    docker_args: -i
  - command: prefetch
    docker_image: quay.io/biocontainers/sra-tools:2.10.0--pl526he1b5a44_0
    docker_command: prefetch

View on GitHub | Raw YAML

Install

Commands (5)

Raw Manifest