bulker/demo2

Raw Manifest

manifest:
  name: bulker/demo2
  commands:
  - command: ipython
    dockerargs: -it
    docker_image: nsheff/ipython
    docker_command: ipython
  - command: pandoc
    docker_image: nsheff/pandoc
    dockerargs: -i
  - command: pip
    dockerargs: -it
    docker_image: python:3.7.4
    docker_command: pip
  - command: python
    dockerargs: -it
    docker_image: python:3.7.4
    docker_command: python
  - command: R
    dockerargs: -it --volume=${HOME}/.local/lib/R:/usr/local/lib/R/host-site-library
    docker_image: r-base:3.6.1
    docker_command: R
  - command: Rscript
    dockerargs: --volume=${HOME}/.local/lib/R:/usr/local/lib/R/host-site-library
    docker_image: r-base:3.6.1
    docker_command: Rscript
  - command: samtools
    dockerargs: -i
    docker_image: quay.io/biocontainers/samtools:1.9--h91753b0_8