manifest:
name: databio/lab
version: 1.2.1
imports:
- bulker/biobase:default
commands:
- command: basemount
docker_image: databio/basemount:0.25.2.3265
- command: cellranger-atac
docker_image: quay.io/cumulus/cellranger-atac:2.1.0
- command: duc
docker_image: databio/duc:1.4.6-lmdb
docker_command: duc
docker_args: -it
- command: jq
docker_image: linuxserver/yq
entrypoint: jq
docker_args: -i
- command: R
docker_image: bioconductor/bioconductor_docker:RELEASE_3_22
docker_command: R
docker_args: -it
description: You should add --volume=${HOME}/R/4.0:/usr/local/lib/R/host-site-library
to tool_args
- command: R3.6
docker_image: bioconductor/bioconductor_docker:RELEASE_3_10
docker_command: R
docker_args: -it
- command: R4.0
docker_image: bioconductor/bioconductor_docker:RELEASE_3_11
docker_command: R
docker_args: -it
description: You should add --volume=${HOME}/R/4.0:/usr/local/lib/R/host-site-library
to tool_args
- command: R4.0.3
docker_image: bioconductor/bioconductor_docker:RELEASE_3_12
docker_command: R
docker_args: -it
description: You should add --volume=${HOME}/R/4.0:/usr/local/lib/R/host-site-library
to tool_args
- command: RC
description: This image has all the latex stuff added in.
docker_image: databio/bioconductor
docker_command: R
docker_args: -it
- command: Rd
description: R development release. To update, run docker pull bioconductor/bioconductor_docker:devel
docker_image: bioconductor/bioconductor_docker:devel
docker_command: R
docker_args: -it
- command: Rscript
docker_image: bioconductor/bioconductor_docker:RELEASE_3_22
docker_command: Rscript
docker_args: -it
- command: Rscript3.6
docker_image: bioconductor/bioconductor_docker:RELEASE_3_10
docker_command: Rscript
- command: Rscript4.0
docker_image: bioconductor/bioconductor_docker:RELEASE_3_11
docker_command: Rscript
docker_args: -it
- command: Rscript4.0.3
docker_image: bioconductor/bioconductor_docker:RELEASE_3_12
docker_command: Rscript
docker_args: -it
- command: Rscriptd
docker_image: bioconductor/bioconductor_docker:devel
docker_command: Rscript
docker_args: -it
- command: stork
docker_image: databio/stork
docker_command: stork
- command: xq
docker_image: linuxserver/yq
entrypoint: xq
docker_args: -i
- command: yq
docker_image: linuxserver/yq
entrypoint: yq
docker_args: -i