databio/refgenie:0.7.0

Raw Manifest

manifest:
  name: databio/refgenie
  version: 0.7.0
  commands:
  - command: bismark_genome_preparation
    docker_image: quay.io/biocontainers/bismark:0.22.1--0
  - command: bowtie2-build
    docker_image: quay.io/biocontainers/bowtie2:2.3.5--py37he860b03_0
  - command: bwa
    docker_image: quay.io/biocontainers/bwa:0.7.17--pl5.22.0_2
  - command: hisat2-build
    docker_image: quay.io/biocontainers/hisat2:2.0.4--py35_0
  - command: kallisto
    docker_image: quay.io/biocontainers/kallisto:0.42.4--2
  - command: salmon
    docker_image: quay.io/biocontainers/salmon:0.14.2--ha0cc327_0
  - command: samtools
    docker_args: -i
    docker_image: quay.io/biocontainers/samtools:1.9--h91753b0_8
  - command: STAR
    docker_image: quay.io/biocontainers/star:2.7.3a--0
  - command: tabix
    docker_image: quay.io/biocontainers/htslib:1.6--0